7F92

Structure of connexin43/Cx43/GJA1 gap junction intercellular channel in LMNG/CHS detergents at pH ~8.0


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM.

Lee, H.J.Cha, H.J.Jeong, H.Lee, S.N.Lee, C.W.Kim, M.Yoo, J.Woo, J.S.

(2023) Nat Commun 14: 931-931

  • DOI: https://doi.org/10.1038/s41467-023-36593-y
  • Primary Citation of Related Structures:  
    7F92, 7F93, 7F94, 7XQ9, 7XQB, 7XQD, 7XQF, 7XQG, 7XQH, 7XQI, 7XQJ

  • PubMed Abstract: 

    Connexin family proteins assemble into hexameric hemichannels in the cell membrane. The hemichannels dock together between two adjacent membranes to form gap junction intercellular channels (GJIChs). We report the cryo-electron microscopy structures of Cx43 GJICh, revealing the dynamic equilibrium state of various channel conformations in detergents and lipid nanodiscs. We identify three different N-terminal helix conformations of Cx43-gate-covering (GCN), pore-lining (PLN), and flexible intermediate (FIN)-that are randomly distributed in purified GJICh particles. The conformational equilibrium shifts to GCN by cholesteryl hemisuccinates and to PLN by C-terminal truncations and at varying pH. While GJIChs that mainly comprise GCN protomers are occluded by lipids, those containing conformationally heterogeneous protomers show markedly different pore sizes. We observe an α-to-π-helix transition in the first transmembrane helix, which creates a side opening to the membrane in the FIN and PLN conformations. This study provides basic structural information to understand the mechanisms of action and regulation of Cx43 GJICh.


  • Organizational Affiliation

    Department of Life Sciences, Korea University, Seoul, 02841, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gap junction alpha-1 protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
382Homo sapiensMutation(s): 0 
Gene Names: GJA1GJAL
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P17302 (Homo sapiens)
Explore P17302 
Go to UniProtKB:  P17302
PHAROS:  P17302
GTEx:  ENSG00000152661 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17302
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
C14
Query on C14

Download Ideal Coordinates CCD File 
AA [auth B]
AB [auth D]
AC [auth G]
AD [auth I]
AE [auth K]
AA [auth B],
AB [auth D],
AC [auth G],
AD [auth I],
AE [auth K],
BA [auth B],
BB [auth D],
BC [auth G],
BD [auth I],
BE [auth K],
CA [auth B],
CB [auth D],
CC [auth G],
CD [auth I],
CE [auth K],
DA [auth B],
DB [auth D],
DC [auth G],
DD [auth I],
DE [auth L],
EA [auth B],
EB [auth E],
EC [auth G],
ED [auth I],
EE [auth L],
FA [auth B],
FB [auth E],
FC [auth G],
FD [auth I],
FE [auth L],
GA [auth B],
GB [auth E],
GC [auth G],
GD [auth I],
GE [auth L],
HA [auth B],
HB [auth E],
HC [auth G],
HD [auth J],
HE [auth L],
IA [auth C],
IB [auth E],
IC [auth G],
ID [auth J],
IE [auth L],
JA [auth C],
JB [auth E],
JC [auth G],
JD [auth J],
JE [auth L],
KA [auth C],
KB [auth E],
KC [auth G],
KD [auth J],
KE [auth L],
LA [auth C],
LB [auth E],
LC [auth H],
LD [auth J],
LE [auth L],
M [auth A],
MA [auth C],
MB [auth E],
MC [auth H],
MD [auth J],
ME [auth L],
N [auth A],
NA [auth C],
NB [auth E],
NC [auth H],
ND [auth J],
NE [auth L],
O [auth A],
OA [auth C],
OB [auth E],
OC [auth H],
OD [auth J],
P [auth A],
PA [auth C],
PB [auth F],
PC [auth H],
PD [auth J],
Q [auth A],
QA [auth C],
QB [auth F],
QC [auth H],
QD [auth J],
R [auth A],
RA [auth C],
RB [auth F],
RC [auth H],
RD [auth J],
S [auth A],
SA [auth C],
SB [auth F],
SC [auth H],
SD [auth K],
T [auth A],
TA [auth D],
TB [auth F],
TC [auth H],
TD [auth K],
U [auth A],
UA [auth D],
UB [auth F],
UC [auth H],
UD [auth K],
V [auth A],
VA [auth D],
VB [auth F],
VC [auth H],
VD [auth K],
W [auth A],
WA [auth D],
WB [auth F],
WC [auth I],
WD [auth K],
X [auth B],
XA [auth D],
XB [auth F],
XC [auth I],
XD [auth K],
Y [auth B],
YA [auth D],
YB [auth F],
YC [auth I],
YD [auth K],
Z [auth B],
ZA [auth D],
ZB [auth F],
ZC [auth I],
ZD [auth K]
TETRADECANE
C14 H30
BGHCVCJVXZWKCC-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2018R1C1B6004447

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-06
    Type: Initial release
  • Version 1.1: 2023-01-25
    Changes: Database references
  • Version 1.2: 2023-05-03
    Changes: Database references